University of Virginia Health System

Local pooled error (LPE) test for gene expression data

Documentation:

• Jain N, Thatte J, Braciale T, Ley K, O'Connell M, and Lee JK (2003). Local pooled error test for identifying differentially expressed genes with a small number of replicated microarrays, Bioinformatics, 19:1945-1951
• Jain N, Cho H, O'Connell M, and Lee JK (2005). Rank-Invariant Resampling-based Estimation of False Discovery Rate for Analysis of Small Sample Microarray Data , BMC Bioinformatics, 6:187 

• Supplementary materials:
• zipped Quantile - Quantile Figures (pdf format)
• zipped Quantile - Quantile Figures (eps format)

   

Software:

• LPE is available at the Bioconductor website.  

Please send mail to Nitin Jain, PhD (Nitin.Jain@pfizer.com) for any question(s) or suggestion.