Student Publications

September 2006-August 2007


Adang LA, Parsons CH, and Kedes DH 2006. Asynchronous progression through the lytic cascade and variations in intracellular viral loads revealed by high-throughput single cell analysis of KSHV infection. Journal of Viology. Oct; 80(20):10073-82.

Adang LA, Tomescu C, Law WK, and Kedes DH 2007. Intracellular KSHV Load Determines Early Loss of Immune Synapse Components. Journal of Virology. May, no. 10.

Kremer BE, Adang, LA, and Macara IG. Septins Regulate Actin Organization and Cell-Cycle Arrest through Nuclear Accumulation of NCK Mediated by SOCS7. Cell. 2007 Sep 7;130(5):837-50.

Smith SC, Oxford G, Baras AS, Owens C, Havaleshko D, Brautigan DL, Safo MK, Theodorescu D.  Expression of ral GTPases, their effectors, and activators in human bladder cancer.  Clin Cancer Res. 2007 Jul 1;13(13):3803-13.

Yu Y, Baras AS, Shirasuna K, Frierson HF Jr, Moskaluk CA. Concurrent loss of heterozygosity and copy number analysis in adenoid cystic carcinoma by SNP genotyping arrays.  Lab Invest. 2007 May; 87(5):430-9.

Pramoonjago P, Baras AS, Moskaluk CA.  Knockdown of Sox4 expression by RNAi induces apoptosis in ACC3 cells.  Oncogene.  2006 Apr 24.

Borue X, Chen J, Condron B. Developmental effects of SSRIs: lessons learned from animal studies. Int. J. Dev. Neuroscience, 2007 Jul7; [Epub ahead of print]

Brodrick B, Vidrich A, Bradley L, Buzan JM, Ilo C., Skaar K., and Cohn SM: Fibroblast Growth Receptor 3 Regulates Crypt Stem Cell Morphogenesis Through a b-catenin/Tcf-4 dependent signaling Mechanism. FASEB J. (2007) 21:A128.12

Reutershan J, Cagnina RE, Chang D, Linden J, and Ley K.  “Therapeutic anti-inflammatory effects of myeloid cell adenosine receptor A2a stimulation in lipopolysaccharide-induced lung injury.”  J. Immunol. 179:1254-63, 2006.

Cagnina E and Linden J, (2006) “Protection from bleomycin-induced pulmonary injury by activating A2A or inhibiting A2B adenosine receptors.”  2006 Experimental Biology Meeting Abstracts. The FASEB Journal, 20, Abstract 429.8.

Digman MA, Dalal RB, Horwitz AR, Gratton E, “Mapping the number of molecules and brightness in a laser scanning microscope”, (2007) Biophysical Journal, in press.

Dalal RB, Digman MA, Horwitz AR, Vetri V, Gratton E, “Determination of particle number and brightness using a laser scanning confocal microscope operating in the analog mode.”, (2007) Microscopy Research and Technique, in press.

Brown CM, Dalal RB, Hebert B, Digman MA, Horwitz AR, Gratton E , “Raster Image Correlation Spectroscopy (RICS) for Measuring Fast Protein Dynamics and Concentrations with a Commercial Laser Scanning Confocal Microscope”, (2007) Journal of Microscopy, in press.

Fiore GL, Edwards JM, Payne SJ, Klinkenberg JL, Gioeli DG, Demas JN, Fraser CL. Ruthenium(II) Tris(bipyridine)-Centered Poly(ethylenimine) for Gene Delivery.  Biomacromolecules. In press ePub.

Calisaneller T, Lin C-L, Ukita N, Yoshimura R, Wang Y, Fitzgerald MP, and Lee KS.  (in preparation).  A blood injection model of subarachnoid hemorrhage in the mouse.  In J. Chen, X. Xu, Z. C. Xu, & J. Zhang (Eds.), Animal Models of Acute Neurological Injuries.  New Jersey: Humana Press.

Hallmark RA & Hunt PS  Social learning about ethanol in preweanling rats: Role of  endogenous opioids.  Developmental Psychobiology.  In press.

Waggoner S, Hall C, Hahn Y, HCV core protein interaction with gC1q receptor inhibits Th1 differentiation of CD4+ T cells via suppression of dendritic cell IL-12 production, Journal of Leukocyte Biology. In press.

Fulkerson PC, Fischetti CA, McBride ML, Hassman LM, Hogan SP, Rothenberg ME.  2006.   A central regulatory role for eosinophils and the eotaxin/CCR3 axis in chronic experimental allergic airway inflammation. Proceedings of the National Academy of Sciences. 31;103(44):16418-23.

Fulkerson PC, Fischetti CA, Hassman LM, Nikolaidis NM, Rothenberg ME.  2006.  Persistent Effects Induced by IL  -13 in the Lung.  American Journal of Respiratory Cell and Molecular Biology. 35(3):337-346.

Lin CH, Platt MD, Ficarro SB, Hoofnagle MH, Shabanowitz J, Comai L, Hunt DF, Owens GK. Mass spectrometric identification of phosphorylation sites of rRNA transcription factor upstream binding factor. Am J Physiol Cell Physiol. 2007;292:C1617-C1624.

Kingsley LA, Chirgwin JM, and Guise TA. Breaking New Ground to Build Bone. Proceedings of the National Academy of Sciences USA.104(26): 10753-54, 2007.

Amos S, Mut M, diPierro CG, Carpenter JE, Xiao A, Kohutek ZA, Redpath GT, Zhao Y, Wang J, Shaffrey ME and Hussaini IM. “Protein Kinase C-α-mediated regulation of Low Density Lipoprotein Receptor Related Protein and Urokinase Increases Astrocytoma Invasion,”  Cancer Research.  In press.

Gordon GJ, Deters LA, Nitz MD, Lieberman BC, Yeap BY, Bueno R.  (2006)  Differential diagnosis of solitary lung nodules with gene expression ratios.  Journal of Thoracic and Cardiovascular Surgery. Sep;132(3):621-7.

Goode TL, Pollard C, Gilleyen J, and Shipman LW. Purification and Crystallization of Hepatic Glucokinase and Glucokinase Regulatory Protein, FASEB J. 2006 20:A960 (Meeting Abstract)

Keepers TR, Psotka MA, Gross LK, Obrig TG. A Murine Model of HUS: Shiga Toxin with Lipopolysaccharide Mimics the Renal Damage and Physiologic Response of Human Disease.  Journal of the American Society of Nephrology. 2006 Dec;17(12): 3404-14.

Clewing JM, Fryssira H, Goodman D, Smithson SF, Sloan EA, Lou S, Huang Y, Choi K, Lucke T, Alpay H, Andre JL, Asakura Y, Biebuyck-Gouge N, Bogdanovic R, Bonneau D, Cancrini C, Cochat P, Cockfield S, Collard L, Cordeiro I, Cormier-Daire V, Cransberg K, Cutka K, Deschenes G, Ehrich JH, Frund S, Georgaki H, Guillen-Navarro E, Hinkelmann B, Kanariou M, Kasap B, Kilic SS, Lama G, Lamfers P, Loirat C, Majore S, Milford D, Morin D, Ozdemir N, Pontz BF, Proesmans W, Psoni S, Reichenbach H, Reif S, Rusu C, Saraiva JM, Sakallioglu O, Schmidt B, Shoemaker L, Sigaudy S, Smith G, Sotsiou F, Stajic N, Stein A, Stray-Pedersen A, Taha D, Taque S, Tizard J, Tsimaratos M, Wong NA, Boerkoel CF.  Schimke immunoosseous dysplasia: suggestions of genetic diversity.  Human Mutation. 2007 Mar;28(3):273-83.

Clewing JM, Fryssira H, Goodman D, Smithson SF, Sloan EA, et al.  Schimke immuno-osseous dysplasia: suggestions of genetic diversity.  Human Mutation.  [In Press].

Sturek JM, Mokelke EA, Zafar MN, and Sturek M. Intravascular ultrasound does not impair coronary artery endothelium. Cor. Art. Dis. (Accepted pending revisions).

Alloosh M, Mokelke EA, Dietz NJ, Sturek, JM, and M. Sturek. Coronary vascular effects of cyclooxygenase-2 inhibition in hypercholesterolemic swine. FASEB J. (In press).

Pidkovka NA, Cherepanova O, Yoshida T, Alexander MR, Deaton RA, Thomas JA, Leitinger N, Owens GK. Oxidized phospholipids induce phenotypic switching of vascular smooth muscle cells in vivo and in vitro. Circ. Res. (accepted)

Hoofnagle MH, Thomas JA, Wamhoff BR, and Owens GK. Origin of Neointimal Smooth Muscle: We’ve Come Full Circle.  Arterioscler. Thromb. Vasc. Biol. 2006; 26:2579-2581.

Thorne BC, Bailey AM, and Peirce-Cottler SM, (2007). Combining Experiments with Multi-Cell Agent-Based Modeling to Study Biological Tissue Patterning. Briefings in Bioinformatics. 8:4.  245-57.  Epub 6/21/2007.  Invited Review

Thorne BC,* Bailey AM,* and Peirce-Cottler SM.  (2007). Multi-cell Agent-based Simulation of the Microvasculature to Study the Dynamics of Circulating Inflammatory Cell Trafficking.  Annals of Biomedical Engineering. 35:6. pg. 916-36. Epub 4/10/2007. * signifies equal contribution to this work

Thorne BC,* Bailey AM*, Benedict KF, and Peirce-Cottler SM.  (2006). Modeling blood vessel growth and leukocyte extravasation in ischemic injury: an integrated agent-based and finite element analysis approach. Journal of Critical Care. 21: 4.  pg. 346.  Refereed Abstract. * signifies equal contribution to this work.

Stites EC, Trampont PC, Ma Z, Ravichandran KS.  Network Analysis of Oncogenic Ras Activation in Cancer.  Science.  (Accepted).

Trotter SA, Kapur J, Anzivino MJ, Lee KS. GABAergic Synaptic Inhibition is Reduced Before Seizure Onset in a Genetic Model of Cortical Malformation. Journal of Neuroscience. 2006, Oct; 26(42):10756-67. Cited in PubMed; PMID: 17050714.